From the former geekswithblogs.net Bruce Eitman, the following is a Windows CE registry editor that can be transferred to the Windows CE device and used to edit the Windows registry.
Using a registry editor or a remote registry editor such as Registry Workshop, the application launch order on startup can be viewed by navigating the registry hive to HKEY_LOCAL_MACHINE→init where the boot order is defined by a series of defined string variables composed of the string Launch and ending in a number. On bootup, applications will be launched in order, starting from the lowest number and ending with the highest number. For example, the path corresponding to the string value Launch20 will be launched, followed by Launch30, followed by Launch50, etc.